Publication

International Journal & Conference

J5. 3DM: Deep decomposition and deconvolution microscopy for rapid neural activity imaging

E.-S. Cho*, S. Han*, K.-H. Lee, C.-H. Kim, Y.-G. Yoon

Optics Express, 2021. (accepted, *co-first authors)

with prof. Cheol-Hee Kim's group @ CNU
[Publisher Link] [Github Link]


C2. Efficient Neural Network Approximation of Robust PCA for Automated Analysis of Calcium Imaging Data

S. Han, E.-S. Cho, I. Park, K. Shin, Y.-G. Yoon

International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2021. (accepted)

with prof. Kijung Shin's group @ KAIST
[Publisher Link] [arXiv Link] [Github Link]


C1. RLP-Net: A Recursive Light Propagation Network for 3-D Virtual Refocusing

C. Shin*, H. Ryu*, E.-S. Cho, Y.-G. Yoon

International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2021. (accepted, *co-first authors, Received Student Travel Award from MICCAI which is given to to the best first author students)
[Publisher Link] [Github Link]


J4. Whole-ExM: Expansion microscopy imaging of all anatomical structures of whole larval zebrafish

J. Sim, C. E Park, I. Cho, K. Min, J.-S. Lee, Y. Chong, J. W. Kim, J. S. Kang, K. D. Piatkevich, E. E. Jung, S.-K. Kwon, Y.-G. Yoon, E. S. Boyden, J.-B. Chang

bioRxiv, 2021.

with prof. Jae-Byum Chang's group @ KAIST
[Publisher Link] ​[bioRxiv Link]


J3. PICASSO: Ultra-multiplexed fluorescence imaging of biomolecules through single-round imaging and blind source unmixing

J. Seo*, Y. Sim*, J. W. Kim*, H. Kim, I. Cho, Y.-G. Yoon**, J.-B. Chang**

bioRxiv, 2021. (*co-first authors, **co-corresponding authors)

with prof. Jae-Byum Chang's group @ KAIST
[Publisher Link] ​[bioRxiv Link]


J2. Sparse decomposition light-field microscopy for high speed imaging of neuronal activity

Y-.G. Yoon*, Z. Wang*, N. Pak, D. Park, P. Dai, J. S. Kang, H-.J. Suk, P. Symvoulidis, B. Guner-Ataman, K. Wang**, E. S. Boyden**

Optica, Oct 2020. (*co-first authors, **co-corresponding authors)

with prof. Ed Boyden's group @ MIT

[Publisher Link]


J1. Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator

O. A. Shemesh, C. Linghu, K. D. Piatkevich, D. Goodwin, O. T. Celiker, H. J. Gritton, M. F. Romano, R. Gao, C-.C Yu, H-.A. Tseng, S. Bensussen, S. Narayan, C-.T. Yang, L. Freifeld, C. A. Siciliano, I. Gupta, J. Wang, N. Pak, Y-.G. Yoon, J. F.P. Yllmann, B. Guner-Ataman, H. Noamany, Z. R. Sheinkopf, W. M. Park, S. Asano, A. E. Keating, J. S. Trimmer, J. Reimer, A. S. Tolias, M. F. Bear, K. M. Tye, X. Han, M. B. Ahrens, E. S. Boyden

Neuron, Aug 2020.

with prof. Ed Boyden's group @ MIT

[Publisher Link]

Before Joining KAIST

International Journal

7. Robotic multidimensional directed evolution of proteins: development and application to fluorescent voltage reporters

K. D. Piatkevich, E. E. Jung, C. Straub, C. Linghu, D. Park, H.-J. Suk, D. R. Hochbaum, D. Goodwin, E. Pnevmatikakis, N. Pak, C.-T. Yang, J. L. Rhoades, O. Shemesh, S. Asano, Y.-G. Yoon, L. Freifeld, J. Saulnier, C. Riegler, F. Engert, T. Hughes, M. Drobizhev, B. Szabo, M. B. Ahrens, S. W. Flavell, B. L. Sabatini, E. S. Boyden

Nature Chemical Biology, Feb 2018.

[Publisher Link]


6. Feasibility of 3D Reconstruction of Neural Circuits using Expansion Microscopy and Barcode-Guided Agglomeration

Y.-G. Yoon, P. Dai, J. Wohlwend, J.-B. Chang, A. H. Marblestone**, E. S. Boyden**

Front. Comput. Neurosci., Oct 2017. (**co-corresponding authors)

[Publisher Link]


5. Iterative expansion microscopy

J.-B. Chang, F. Chen, Y.-G. Yoon, E. E. Jung, H. Babcock, J. S. Kang, S. Asano, H.-J. Suk, N. Pak, P. W. Tillberg, A. Wassie, D. Cai, E. S. Boyden

Nature Methods, vol. 14, no. 6, Jun 2017.

[Publisher Link]


4. Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy

R. Prevedel*, Y.-G. Yoon*, M. Hoffmann, N. Pak, G. Wetzstein, S. Kato, T. Schrödel, R. Raskar, M. Zimmer, E.S. Boyden**, A. Vaziri**

Nature Methods, vol. 11, no. 7, Jul 2014. (*co-first authors, **co-corresponding authors)

[Publisher Link]


3. A Highly-Digital VCO-based Analog-to-Digital Converter using Phase Interpolator and Digital Calibration

T.-K. Jang, J. Kim, Y.-G. Yoon, S.H. Cho

IEEE Trans. VLSI, vol. 20, no. 8, Aug 2012.

[Publisher Link]


2. Design and Analysis of Voltage-Controlled Oscillator-based Analog-to-Digital Converter

J. Kim, T.-K. Jang, Y.-G. Yoon, S.H. Cho

IEEE Trans. Circuits Syst. I, vol. 57, no. 1, Jan 2010.

[Publisher Link]


1. A Time-based Bandpass ADC using Time-Interleaved Voltage-Controlled Oscillators

Y.-G. Yoon, J. Kim, T.-K. Jang, S.H. Cho

IEEE Trans. Circuits Syst. I, vol. 55, no. 11, Dec 2008. (received 2009 IEEE Circuits and Systems Society Guillemon-Cauer Best Paper Award)

[Publisher Link]


International Conferences

14. Sparse decomposition light-field microscopy for high speed 3-D imaging of neuronal activity

Y.-G. Yoon*, Z. Wang*, D. Park, N. Pak, J. Kang, H.-J. Suk, P. Dai, K. Wang, E. S. Boyden

Society for Neuroscience (SfN), Nov. 2018. (*co-first authors)

13. Robust, millivolt-resolution, high-speed neural voltage imaging in multiple species

K. D. Piatkevich, E. E. Jung, C. Straub, C. Linghu, D. Park, H.-J. Suk, D. R. Hochbaum, D. Goodwin, E. Pnevmatikakis, N. Pak, C.-T. Yang, J. L. Rhoades, O. Shemesh, S. Asano, Y.-G. Yoon, L. Freifeld, J. Saulnier, C. Riegler, F. Engert, T. Hughes, M. Drobizhev, B. Szabo, M. B. Ahrens, S. W. Flavell, B. L. Sabatini, E. S. Boyden

Society for Neuroscience (SfN), Nov. 2018.

12. Precision calcium imaging of dense neural populations via a cell body-targeted calcium indicator

O. A. Shemesh, C. Linghu, K. D. Piatkevich, D. Goodwin, H. J. Gritton, M. F. Romano, H. Tseng, S. Bensussen, S. Narayan, C.-T. Yang, L. Freifeld, C. Siciliano, I. Gupta, N. Pak, Y.-G. Yoon, J. Ullmann, Z. R. Sheinkopf, W. M. Park, K. Tye, A. E. Keating, J. Reimer, A. Tolias, X. Han, M. B. Ahrens, E. S. Boyden

Society for Neuroscience (SfN), Nov. 2018.

11. 20-nm resolution imaging of brain circuitry by next-generation expansion microscopy

J.-B. Chang, F. Chen, Y.-G. Yoon, E. Jung, H. Babcock, J. Kang, S. Asano, H.-J. Suk, N. Pak, P. Tillberg, A. Wassie, X. Zhuang, E. S. Boyden

Society for Neuroscience (SfN), Nov. 2016.

10. 3-D reconstruction of neural circuits using expansion microscopy

Y.-G. Yoon, P. Dai, J. Wohlwend, J.-B. Chang, A. Marblestone**, E. S. Boyden**

Society for Neuroscience (SfN), Nov. 2016. (**co-corresponding authors)

9. Sparse reconstruction light-field microscopy for high-resolution 3D-imaging of neuronal activity

Y.-G. Yoon*, N. Pak*, L. Freifeld*, M. A. Henninger, J. Deguchi, N. Savidis, E. S. Boyden

Society for Neuroscience (SfN), Oct. 2015. (*co-first authors)

8. Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy

R. Prevedel*, Y.-G. Yoon*, M. Hoffmann, N. Pak, G. Wetzstein, S. Kato, T. Schrödel, R. Raskar, M. Zimmer, E. S. Boyden**, A. Vaziri**

Society for Neuroscience (SfN), Oct. 2014. (*co-first authors, **co-corresponding authors)

7. A Cepstral Analysis based Method for Quantifying the Depth of Anesthesia from Human EEG

T.-H. Kim, Y.-G. Yoon, J. Uhm, D.-W. Jeong, S. Z. Yoon, S.-H. Park

IEEE International Conference in Medicine and Biology Society (EMBC), Jul. 2013.

6. Monitoring the Depth of Anesthesia from rat EEG using Modified Shannon Entropy Analysis

Y.-G. Yoon, T.-H. Kim, D.-W. Jeong, S.-H, Park

IEEE International Conference in Medicine and Biology Society (EMBC), Aug. 2011.

5. A Time-based Noise Shaping Analog-to-Digital Converter using a Gated-Ring Oscillator

Y.-G. Yoon, S.-H, Park, S. H. Cho

IEEE International Microwave Workshop Series (IMWS) on Intelligent Radio for Future Personal Terminals, Aug. 2011.

4. A Linearization Technique for Voltage-Controlled Oscillator-based ADC

Y.-G. Yoon, M.-C. Cho, S.H. Cho

IEEE International SoC Design Conference, Nov. 2009.

3. Design of Highly Programmable Bio-impedance Measurement IC

M.-C. Cho, Y.-G. Yoon, S.H. Cho

IEEE International SoC Design Conference, Nov. 2009.

2. A Pulse Transit Time Measurement Method Based on Electrocardiography and Bioimpedance

S. Bang, C. Lee, M.-C. Cho, Y.-G. Yoon, S.H. Cho

IEEE Biomedical Circuits and Systems Conference, Nov. 2009.

1. A 1.5-GHz 63dB SNR 20mW Direct RF Sampling Bandpass VCO-based ADC in 65nm CMOS

Y.-G. Yoon, S.H. Cho

IEEE Symposium on VLSI Circuits, pp.270-271, Jul. 2009.